Transcript: lnc-HAAO-7:12

Basic information

LNCipedia transcript ID: lnc-HAAO-7:12 
LNCipedia gene ID: lnc-HAAO-7
Ensembl Gene ID: ENSG00000224739
Ensembl Transcript ID: ENST00000457457
Location (hg38): chr2:43001355-43006060
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 237 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000457457; ENST00000457457.2; AC016735.1-001; OTTHUMT00000326020.2; NONHSAT070368
Alternative gene names: ENSG00000224739; AC016735.1; ENSG00000224739.2; OTTHUMG00000152375.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -85.6657 non-coding 
CPAT coding probability 0.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HAAO-7:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-THADA-4:2
3.1 lnc-THADA-4:2
4.0 lnc-THADA-4:2
4.1 lnc-THADA-4:2
5.0 lnc-THADA-4:2
5.1 lnc-ATP6V1E2-41:12
5.2 lnc-HAAO-7:12