Transcript: lnc-HABP4-1:1

Basic information

LNCipedia transcript ID: lnc-HABP4-1:1 
LNCipedia gene ID: lnc-HABP4-1
Location (hg38): chr9:96502867-96503530
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 484 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000422818.1; RP11-172F4.5-001; OTTHUMT00000053268.1; NONHSAT133432
Alternative gene names: ENSG00000234687.1; RP11-172F4.5; OTTHUMG00000020297.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -710.5596 non-coding 
CPAT coding probability 3.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HABP4-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HABP4-1:1
4.0 lnc-HABP4-1:1
4.1 lnc-HABP4-1:1
5.0 lnc-HABP4-1:1
5.1 lnc-FAM120A-90:1
5.2 lnc-HABP4-1:1