Transcript: lnc-HAO2-2:21

Basic information

LNCipedia transcript ID: lnc-HAO2-2:21 
LNCipedia gene ID: lnc-HAO2-2
Location (hg38): chr1:119178647-119184263
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5617 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA48:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 86.144 coding 
CPAT coding probability 13.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-HAO2-2:21 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-HAO2-2:21
4.1 lnc-HAO2-2:21
5.0 lnc-HAO2-2:21
5.1 lnc-HAO2-2:21
5.2 lnc-HAO2-2:21