Transcript: lnc-HBD-1:3

Basic information

LNCipedia transcript ID: lnc-HBD-1:3 
LNCipedia gene ID: lnc-HBD-1
Location (hg38): chr11:5225467-5225678
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 212 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT017666
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
VVAGVANALAHK 100% sense-1
Lee translation initiation sites 0 non-coding 
PhyloCSF score -136.3814 non-coding 
CPAT coding probability 0.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-HBD-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HBD-1:3
4.0 lnc-HBD-1:3
4.1 lnc-HBD-1:3
5.0 lnc-HBD-1:3
5.1 lnc-OR52A1-2:3
5.2 lnc-HBD-1:3