Transcript: lnc-HDAC4-1:1

Basic information

LNCipedia transcript ID: lnc-HDAC4-1:1 
LNCipedia gene ID: lnc-HDAC4-1
Location (hg38): chr2:239007026-239009443
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2418 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000567151.1; RP11-648F7.1-001; OTTHUMT00000431739.1; NONHSAT077773
Alternative gene names: ENSG00000260506.1; RP11-648F7.1; OTTHUMG00000176302.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.1105 non-coding 
CPAT coding probability 8.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HDAC4-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HDAC4-1:1
4.0 lnc-HDAC4-1:1
4.1 lnc-HDAC4-1:1
5.0 lnc-HDAC4-1:1
5.1 lnc-STK25-49:1
5.2 lnc-HDAC4-1:1