Transcript: lnc-HDAC4-4:1

Basic information

LNCipedia transcript ID: lnc-HDAC4-4:1 
LNCipedia gene ID: lnc-HDAC4-4
Ensembl Gene ID: ENSG00000226992
Ensembl Transcript ID: ENST00000441444
Location (hg38): chr2:238788648-238789716
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 592 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003520; ENST00000441444; ENST00000441444.1; AC144525.1-001; OTTHUMT00000328239.1; NONHSAT077767
Alternative gene names: XLOC_002538; linc-PER2-4; ENSG00000226992; AC144525.1; ENSG00000226992.1; OTTHUMG00000152844.1; AC145625.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -160.9764 non-coding 
CPAT coding probability 3.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HDAC4-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HDAC4-3:1
3.1 lnc-HDAC4-4:1
4.0 lnc-HDAC4-4:1
4.1 lnc-HDAC4-4:1
5.0 lnc-HDAC4-4:1
5.1 lnc-ASB18-42:1
5.2 lnc-HDAC4-4:1