Transcript: lnc-HDDC2-3:1

Basic information

LNCipedia transcript ID: lnc-HDDC2-3:1 
LNCipedia gene ID: lnc-HDDC2-3
Location (hg38): chr6:125008755-125009489
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 484 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000431104.1; RP11-510H23.3-001; OTTHUMT00000042061.1; NONHSAT114785
Alternative gene names: ENSG00000229819.1; RP11-510H23.3; OTTHUMG00000015503.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -155.564 non-coding 
CPAT coding probability 9.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HDDC2-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HDDC2-3:1
4.0 lnc-HDDC2-3:1
4.1 lnc-HDDC2-3:1
5.0 lnc-HDDC2-3:1
5.1 lnc-HDDC2-3:1
5.2 lnc-HDDC2-3:1