Transcript: lnc-HDDC2-5:11

Basic information

LNCipedia transcript ID: lnc-HDDC2-5:11 
LNCipedia gene ID: lnc-HDDC2-5
Location (hg38): chr6:125744575-125749395
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4821 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000237742.2|HBMT00001260855.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -86.9837 non-coding 
CPAT coding probability 6.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HDDC2-5:11 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-HDDC2-5:11
5.0 lnc-HDDC2-5:11
5.1 lnc-HDDC2-5:11
5.2 lnc-HDDC2-5:11