Transcript: lnc-HDDC2-5:15

Basic information

LNCipedia transcript ID: lnc-HDDC2-5:15 
LNCipedia gene ID: lnc-HDDC2-5
Location (hg38): chr6:125686163-125749395
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 7775 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000237742.2|MICT00000310958.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 6.1646 non-coding 
CPAT coding probability 8.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HDDC2-5:15 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-HDDC2-5:15
5.0 lnc-HDDC2-5:15
5.1 lnc-HDDC2-5:15
5.2 lnc-HDDC2-5:15