Transcript: lnc-HDDC3-3:1

Basic information

LNCipedia transcript ID: lnc-HDDC3-3:1 
LNCipedia gene ID: lnc-HDDC3-3
Location (hg38): chr15:90882477-90883458
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 266 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000561165.1; CTD-3094K11.2-001; OTTHUMT00000418388.1; NONHSAT048434
Alternative gene names: ENSG00000259260.1; CTD-3094K11.2; OTTHUMG00000172401.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 5.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HDDC3-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HDDC3-3:1
4.0 lnc-HDDC3-3:1
4.1 lnc-HDDC3-3:1
5.0 lnc-HDDC3-3:1
5.1 lnc-CIB1-11:2
5.2 lnc-HDDC3-3:1