Transcript: lnc-HDDC3-4:6

Basic information

LNCipedia transcript ID: lnc-HDDC3-4:6 
LNCipedia gene ID: lnc-HDDC3-4
Ensembl Gene ID: ENSG00000259314
Ensembl Transcript ID: ENST00000559839
Location (hg38): chr15:90604225-90614558
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 807 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000559839.1; CTD-3065B20.3-001; OTTHUMT00000417936.1; NONHSAT048405
Alternative gene names: ENSG00000259314.1; CTD-3065B20.3; OTTHUMG00000172334.1; AC103739.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 84.0874 coding 
CPAT coding probability 3.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-HDDC3-4:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GABARAPL3-4:1
4.0 lnc-GABARAPL3-4:1
4.1 lnc-GABARAPL3-4:1
5.0 lnc-GABARAPL3-4:1
5.1 lnc-CIB1-8:1
5.2 lnc-HDDC3-4:6