Transcript: lnc-HEATR6-1:16

Basic information

LNCipedia transcript ID: lnc-HEATR6-1:16 
LNCipedia gene ID: lnc-HEATR6-1
Location (hg38): chr17:60083566-60088256
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 605 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: NONHSAT055062; ENST00000588180.1; ENST00000588180.5
Alternative gene names: ENSG00000261040.2; CTD-2319I12.1; ENSG00000261040.6; WFDC21P


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -105.2208 non-coding 
CPAT coding probability 1.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HEATR6-1:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HEATR6-1:16
4.0 lnc-HEATR6-1:16
4.1 lnc-HEATR6-1:16
5.0 lnc-HEATR6-1:16
5.1 lnc-TUBD1-4:29
5.2 lnc-HEATR6-1:16