Transcript: lnc-HENMT1-1:1

Basic information

LNCipedia transcript ID: lnc-HENMT1-1:1 
LNCipedia gene ID: lnc-HENMT1-1
Location (hg38): chr1:108734256-108736272
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 444 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000437400.1; RP11-293A10.3-001; OTTHUMT00000030590.1; NONHSAT004994
Alternative gene names: ENSG00000232971.1; RP11-293A10.3; OTTHUMG00000011121.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -184.2663 non-coding 
CPAT coding probability 1.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HENMT1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HENMT1-1:1
4.0 lnc-HENMT1-1:1
4.1 lnc-HENMT1-1:1
5.0 lnc-HENMT1-1:1
5.1 lnc-LAMTOR5-34:1
5.2 lnc-HENMT1-1:1