Transcript: lnc-HERC6-2:8

Basic information

LNCipedia transcript ID: lnc-HERC6-2:8 
LNCipedia gene ID: lnc-HERC6-2
Location (hg38): chr4:88284936-88331421
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1660 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000246375.2|ENST00000500009.2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 8.4642 non-coding 
CPAT coding probability 0.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HERC6-2:8 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-HERC6-2:8
5.0 lnc-HERC6-2:8
5.1 lnc-HERC6-2:8
5.2 lnc-HERC6-2:8