Transcript: lnc-HES4-1:1

Basic information

LNCipedia transcript ID: lnc-HES4-1:1 
LNCipedia gene ID: lnc-HES4-1
Ensembl Gene ID: ENSG00000224969
Ensembl Transcript ID: ENST00000458555
Location (hg38): chr1:1011997-1013193
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 471 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000447; ENST00000458555.1; RP11-54O7.11-001; OTTHUMT00000097998.1; NONHSAT000221
Alternative gene names: XLOC_000671; linc-HES4-1; ENSG00000224969.1; RP11-54O7.11; OTTHUMG00000040779.1; AL645608.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.928 non-coding 
CPAT coding probability 0.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HES4-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HES4-1:1
3.1 lnc-HES4-1:1
4.0 lnc-HES4-1:1
4.1 lnc-HES4-1:1
5.0 lnc-HES4-1:1
5.1 lnc-CLSTN1-159:1
5.2 lnc-HES4-1:1