Transcript: lnc-HGF-2:1

Basic information

LNCipedia transcript ID: lnc-HGF-2:1 
LNCipedia gene ID: lnc-HGF-2
Location (hg38): chr7:81528403-81561783
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 612 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000412900; ENST00000412900.2; AC008163.4-001; OTTHUMT00000340013.3
Alternative gene names: ENSG00000234113; AC008163.4; ENSG00000234113.2; OTTHUMG00000155412.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 188.411 coding 
CPAT coding probability 20.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-HGF-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HGF-1:1
3.1 lnc-HGF-2:1
4.0 lnc-HGF-2:1
4.1 lnc-HGF-2:1
5.0 lnc-HGF-2:1
5.1 lnc-HGF-2:1
5.2 lnc-HGF-2:1