Transcript: lnc-HHIPL2-1:1

Basic information

LNCipedia transcript ID: lnc-HHIPL2-1:1 
LNCipedia gene ID: lnc-HHIPL2-1
Location (hg38): chr1:222452740-222454705
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 316 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00000741; ENST00000455363; ENST00000455363.1; RP11-358H9.1-001; OTTHUMT00000090768.1; NONHSAT009658
Alternative gene names: XLOC_001216; linc-DUSP10-3; ENSG00000226643; RP11-358H9.1; ENSG00000226643.1; OTTHUMG00000037291.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -186.3745 non-coding 
CPAT coding probability 3.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HHIPL2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HHIPL2-1:1
3.1 lnc-HHIPL2-1:1
4.0 lnc-HHIPL2-1:1
4.1 lnc-HHIPL2-1:1
5.0 lnc-HHIPL2-1:1
5.1 lnc-LEFTY2-58:5
5.2 lnc-HHIPL2-1:1