Transcript: lnc-HHIPL2-7:5

Basic information

LNCipedia transcript ID: lnc-HHIPL2-7:5 
LNCipedia gene ID: lnc-HHIPL2-7
Ensembl Gene ID: ENSG00000276997
Ensembl Transcript ID: ENST00000621440
Location (hg38): chr1:222477252-222489700
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 545 bp
Exons: 5
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000621440.1
Alternative gene names: ENSG00000276997.4; RP11-378J18.9; AL513314.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -3.3198 non-coding 
CPAT coding probability 3.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HHIPL2-7:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-HHIPL2-7:5
4.1 lnc-HHIPL2-7:5
5.0 lnc-HHIPL2-7:5
5.1 lnc-LEFTY2-57:5
5.2 lnc-HHIPL2-7:5