Transcript: lnc-HIP1R-1:2

Basic information

LNCipedia transcript ID: lnc-HIP1R-1:2 
LNCipedia gene ID: lnc-HIP1R-1
Ensembl Gene ID: ENSG00000256152
Ensembl Transcript ID: ENST00000537827
Location (hg38): chr12:122865335-122867021
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 484 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT031541; ENST00000537827.2
Alternative gene names: ENSG00000256152.2; RP11-463O12.3; AC027290.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -143.5367 non-coding 
CPAT coding probability 1.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HIP1R-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HIP1R-1:2
4.0 lnc-HIP1R-1:2
4.1 lnc-HIP1R-1:2
5.0 lnc-HIP1R-1:2
5.1 lnc-KMT5A-12:2
5.2 lnc-HIP1R-1:2