Transcript: lnc-HIST1H1A-1:2

Basic information

LNCipedia transcript ID: lnc-HIST1H1A-1:2 
LNCipedia gene ID: lnc-HIST1H1A-1
Location (hg38): chr6:25998282-26000824
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 990 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00012114; NONHSAT108203
Alternative gene names: XLOC_005647; linc-SLC17A2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.5393 non-coding 
CPAT coding probability 14.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HIST1H1A-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HIST1H1A-1:2
3.1 lnc-HIST1H1A-1:2
4.0 lnc-HIST1H1A-1:2
4.1 lnc-HIST1H1A-1:2
5.0 lnc-HIST1H1A-1:2
5.1 lnc-C6orf62-33:2
5.2 lnc-HIST1H1A-1:2