Transcript: lnc-HIST1H1A-1:4

Basic information

LNCipedia transcript ID: lnc-HIST1H1A-1:4 
LNCipedia gene ID: lnc-HIST1H1A-1
Ensembl Gene ID: ENSG00000272558
Ensembl Transcript ID: ENST00000608931
Location (hg38): chr6:25983812-25999167
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 354 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000608931.1
Alternative gene names: ENSG00000272558.1; U91328.21; U91328.3; U91328.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -60.2826 non-coding 
CPAT coding probability 0.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HIST1H1A-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HIST1H1A-1:4
4.0 lnc-HIST1H1A-1:4
4.1 lnc-HIST1H1A-1:4
5.0 lnc-HIST1H1A-1:4
5.1 lnc-C6orf62-33:4
5.2 lnc-HIST1H1A-1:4