Transcript: lnc-HIST1H1A-3:4

Basic information

LNCipedia transcript ID: lnc-HIST1H1A-3:4 
LNCipedia gene ID: lnc-HIST1H1A-3
Location (hg38): chr6:25984785-25992543
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 6639 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000087827.1|MICT00000299083.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 11.8766 non-coding 
CPAT coding probability 0.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HIST1H1A-3:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-HIST1H1A-3:4
5.0 lnc-HIST1H1A-3:4
5.1 lnc-C6orf62-31:3
5.2 lnc-HIST1H1A-3:4