Transcript: lnc-HIST1H2AI-1:3

Basic information

LNCipedia transcript ID: lnc-HIST1H2AI-1:3 
LNCipedia gene ID: lnc-HIST1H2AI-1
Location (hg38): chr6:27761503-27763267
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1514 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000508489; TCONS_00011277; NONHSAT108403
Alternative gene names: ENSG00000248841; XLOC_005221; linc-HIST1H2AI-1; AL009179.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 28.967 non-coding 
CPAT coding probability 2.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HIST1H2AI-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HIST1H2AI-1:3
3.1 lnc-HIST1H2AI-1:3
4.0 lnc-HIST1H2AI-1:3
4.1 lnc-HIST1H2AI-1:3
5.0 lnc-HIST1H2AI-1:3
5.1 lnc-OR2I1P-68:8
5.2 lnc-HIST1H2AI-1:3