Transcript: lnc-HIST1H2AI-3:11

Basic information

LNCipedia transcript ID: lnc-HIST1H2AI-3:11 
LNCipedia gene ID: lnc-HIST1H2AI-3
Ensembl Gene ID: ENSG00000281706
Ensembl Transcript ID: ENST00000625477
Location (hg38): chr6:27694073-27702713
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 834 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000625477.1
Alternative gene names: ENSG00000281706.2; LINC01012


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -14.6591 non-coding 
CPAT coding probability 2.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HIST1H2AI-3:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-HIST1H2AI-3:11
4.1 lnc-HIST1H2AI-3:11
5.0 lnc-HIST1H2AI-3:11
5.1 lnc-OR2I1P-69:13
5.2 lnc-HIST1H2AI-3:11