Transcript: lnc-HIST1H2AI-3:12

Basic information

LNCipedia transcript ID: lnc-HIST1H2AI-3:12 
LNCipedia gene ID: lnc-HIST1H2AI-3
Location (hg38): chr6:27710210-27713097
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 319 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00011758; NONHSAT108400
Alternative gene names: XLOC_005220; linc-HIST1H2AI-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -217.2108 non-coding 
CPAT coding probability 1.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HIST1H2AI-3:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HIST1H2AI-2:1
3.1 lnc-HIST1H2AI-2:1
4.0 lnc-HIST1H2AI-3:12
4.1 lnc-HIST1H2AI-3:12
5.0 lnc-HIST1H2AI-3:12
5.1 lnc-OR2I1P-69:17
5.2 lnc-HIST1H2AI-3:12