Transcript: lnc-HIST1H2AI-3:3

Basic information

LNCipedia transcript ID: lnc-HIST1H2AI-3:3 
LNCipedia gene ID: lnc-HIST1H2AI-3
Location (hg38): chr6:27694035-27702417
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 576 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00012446
Alternative gene names: XLOC_005219; linc-HIST1H2AI-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -104.6326 non-coding 
CPAT coding probability 0.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HIST1H2AI-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HIST1H2AI-3:3
3.1 lnc-HIST1H2AI-3:3
4.0 lnc-HIST1H2AI-3:3
4.1 lnc-HIST1H2AI-3:3
5.0 lnc-HIST1H2AI-3:3
5.1 lnc-OR2I1P-69:3
5.2 lnc-HIST1H2AI-3:3