Transcript: lnc-HIST1H2AI-3:6

Basic information

LNCipedia transcript ID: lnc-HIST1H2AI-3:6 
LNCipedia gene ID: lnc-HIST1H2AI-3
Ensembl Gene ID: ENSG00000281706
Ensembl Transcript ID: ENST00000628328
RefSeq ID: NR_038293
Location (hg38): chr6:27694035-27710222
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 675 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT108394; NR_038293; ENST00000628328.2; NR_038293.1
Alternative gene names: ENSG00000281706.2; LINC01012


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 23.8934 non-coding 
CPAT coding probability 0.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HIST1H2AI-3:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HIST1H2AI-3:6
4.0 lnc-HIST1H2AI-3:6
4.1 lnc-HIST1H2AI-3:6
5.0 lnc-HIST1H2AI-3:6
5.1 lnc-OR2I1P-69:4
5.2 lnc-HIST1H2AI-3:6