Transcript: lnc-HIST1H2BJ-3:1

Basic information

LNCipedia transcript ID: lnc-HIST1H2BJ-3:1 
LNCipedia gene ID: lnc-HIST1H2BJ-3
Ensembl Gene ID: ENSG00000272468
Ensembl Transcript ID: ENST00000607175
Location (hg38): chr6:27122657-27123221
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 565 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000607175.1
Alternative gene names: ENSG00000272468.1; RP1-86C11.7; AL021807.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.8743 non-coding 
CPAT coding probability 1.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HIST1H2BJ-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HIST1H2BJ-3:1
4.0 lnc-HIST1H2BJ-3:1
4.1 lnc-HIST1H2BJ-3:1
5.0 lnc-HIST1H2BJ-3:1
5.1 lnc-C6orf62-63:1
5.2 lnc-HIST1H2BJ-3:1