Transcript: lnc-HIST2H2AA4-1:1

Basic information

LNCipedia transcript ID: lnc-HIST2H2AA4-1:1 
LNCipedia gene ID: lnc-HIST2H2AA4-1
Ensembl Gene ID: ENSG00000272993
Ensembl Transcript ID: ENST00000608318
Location (hg38): chr1:149845816-149846486
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 671 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000608318.1
Alternative gene names: ENSG00000272993.1; RP11-196G18.24; AC239868.4; AC239868.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -71.7855 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HIST2H2AA4-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HIST2H2AA4-1:1
4.0 lnc-HIST2H2AA4-1:1
4.1 lnc-HIST2H2AA4-1:1
5.0 lnc-HIST2H2AA4-1:1
5.1 lnc-HIST2H2AA4-1:1
5.2 lnc-HIST2H2AA4-1:1