Transcript: lnc-HIST2H2BF-5:2

Basic information

LNCipedia transcript ID: lnc-HIST2H2BF-5:2 
LNCipedia gene ID: lnc-HIST2H2BF-5
Location (hg38): chr1:149618320-149618806
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 487 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT006227; ENST00000594899.1
Alternative gene names: ENSG00000269614.1; RP11-277L2.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -69.0416 non-coding 
CPAT coding probability 0.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HIST2H2BF-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM72C-5:1
4.0 lnc-FAM72C-5:1
4.1 lnc-FAM72C-5:1
5.0 lnc-FAM72C-5:1
5.1 lnc-HIST2H2BF-5:1
5.2 lnc-HIST2H2BF-5:2