Transcript: lnc-HIST2H3PS2-13:1

Basic information

LNCipedia transcript ID: lnc-HIST2H3PS2-13:1 
LNCipedia gene ID: lnc-HIST2H3PS2-13
Ensembl Gene ID: ENSG00000235887
Ensembl Transcript ID: ENST00000456469
Location (hg38): chr1:143499187-143500512
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 408 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000300; ENST00000456469; ENST00000456469.1; RP11-763B22.6-001; OTTHUMT00000097806.1; NONHSAT006149
Alternative gene names: XLOC_000391; linc-PPIAL4A-6; ENSG00000235887; RP11-763B22.6; ENSG00000235887.2; OTTHUMG00000040701.1; AC239859.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.5452 non-coding 
CPAT coding probability 3.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HIST2H3PS2-13:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NBPF16-2:1
3.1 lnc-NBPF16-2:1
4.0 lnc-NBPF16-2:1
4.1 lnc-NBPF16-2:1
5.0 lnc-NBPF16-2:1
5.1 lnc-FAM72C-14:1
5.2 lnc-HIST2H3PS2-13:1