Transcript: lnc-HIVEP1-5:1

Basic information

LNCipedia transcript ID: lnc-HIVEP1-5:1 
LNCipedia gene ID: lnc-HIVEP1-5
Location (hg38): chr6:12180446-12183997
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3174 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT107779; FPKM1_group_27124_transcript_2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -92.3473 non-coding 
CPAT coding probability 2.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HIVEP1-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HIVEP1-5:1
4.0 lnc-HIVEP1-5:1
4.1 lnc-HIVEP1-5:1
5.0 lnc-HIVEP1-5:1
5.1 lnc-PRPF4B-135:1
5.2 lnc-HIVEP1-5:1