Transcript: lnc-HLA-B-2:3

Basic information

LNCipedia transcript ID: lnc-HLA-B-2:3 
LNCipedia gene ID: lnc-HLA-B-2
Ensembl Gene ID: ENSG00000272221
Ensembl Transcript ID: ENST00000606743
Location (hg38): chr6:31394289-31395495
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1207 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000606743.1
Alternative gene names: ENSG00000272221.1; XXbac-BPG181B23.7; AL645933.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.7699 non-coding 
CPAT coding probability 36.85% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-HLA-B-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HLA-B-2:3
4.0 lnc-HLA-B-2:3
4.1 lnc-HLA-B-2:3
5.0 lnc-HLA-B-2:3
5.1 lnc-PSORS1C2-12:9
5.2 lnc-HLA-B-2:3