Transcript: lnc-HLA-B-2:7

Basic information

LNCipedia transcript ID: lnc-HLA-B-2:7 
LNCipedia gene ID: lnc-HLA-B-2
Location (hg38): chr6:31394285-31400649
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1529 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000272501.1|FTMT22100010174.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 11.2154 non-coding 
CPAT coding probability 30.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HLA-B-2:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-HLA-B-2:7
5.0 lnc-HLA-B-2:7
5.1 lnc-PSORS1C2-12:3
5.2 lnc-HLA-B-2:7