Transcript: lnc-HLA-DMA-3:1

Basic information

LNCipedia transcript ID: lnc-HLA-DMA-3:1 
LNCipedia gene ID: lnc-HLA-DMA-3
Location (hg38): chr6:33007445-33008124
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 545 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT108961
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -222.1788 non-coding 
CPAT coding probability 3.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HLA-DMA-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HLA-DMA-3:1
4.0 lnc-HLA-DMA-3:1
4.1 lnc-HLA-DMA-3:1
5.0 lnc-HLA-DMA-3:1
5.1 lnc-LEMD2-21:1
5.2 lnc-HLA-DMA-3:1