Transcript: lnc-HLA-DPB1-14:1

Basic information

LNCipedia transcript ID: lnc-HLA-DPB1-14:1 
LNCipedia gene ID: lnc-HLA-DPB1-14
Ensembl Gene ID: ENSG00000223837
Ensembl Transcript ID: ENST00000415875
Location (hg38): chr6:32970232-32970886
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 338 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000415875.2; BRD2-IT1-001; OTTHUMT00000276930.2; NONHSAT108953
Alternative gene names: ENSG00000223837.2; BRD2-IT1; OTTHUMG00000140321.2; ; AL645941.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -464.4064 non-coding 
CPAT coding probability 1.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HLA-DPB1-14:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PSMB9-12:1
4.0 BRD2-IT1:1
4.1 BRD2-IT1:1
5.0 BRD2-IT1:1
5.1 lnc-TNF-77:1
5.2 lnc-HLA-DPB1-14:1