Transcript: lnc-HLA-DQA2-1:2

Basic information

LNCipedia transcript ID: lnc-HLA-DQA2-1:2 
LNCipedia gene ID: lnc-HLA-DQA2-1
Location (hg38): chr6:32718030-32718832
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 396 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00011292; ENST00000455328; ENST00000455328.1; XXbac-BPG254F23.7-002; OTTHUMT00000276169.1; NONHSAT108929
Alternative gene names: XLOC_005258; linc-HLA-DQA2; ENSG00000232080; XXbac-BPG254F23.7; ENSG00000232080.1; OTTHUMG00000140119.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 40.5907 non-coding 
CPAT coding probability 12.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HLA-DQA2-1:2 no no no no

Available literature

  1. Ning (2014), LincSNP: a database of linking disease-associated SNPs to human large intergenic non-coding RNAs., BMC Bioinformatics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HLA-DQA2-1:2
3.1 lnc-HLA-DQA2-1:2
4.0 lnc-HLA-DQA2-1:2
4.1 lnc-HLA-DQA2-1:2
5.0 lnc-HLA-DQA2-1:2
5.1 lnc-TNF-73:6
5.2 lnc-HLA-DQA2-1:2