Transcript: lnc-HLA-DQA2-1:7

Basic information

LNCipedia transcript ID: lnc-HLA-DQA2-1:7 
LNCipedia gene ID: lnc-HLA-DQA2-1
Ensembl Gene ID: ENSG00000232080
Ensembl Transcript ID: ENST00000621553
Location (hg38): chr6:32718029-32718832
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 397 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000621553.1
Alternative gene names: ENSG00000232080.5; XXbac-BPG254F23.7; AL662789.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 40.5907 non-coding 
CPAT coding probability 12.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HLA-DQA2-1:7 no no no no

Available literature

  1. Ning (2014), LincSNP: a database of linking disease-associated SNPs to human large intergenic non-coding RNAs., BMC Bioinformatics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-HLA-DQA2-1:7
4.1 lnc-HLA-DQA2-1:7
5.0 lnc-HLA-DQA2-1:7
5.1 lnc-TNF-73:5
5.2 lnc-HLA-DQA2-1:7