Transcript: lnc-HLA-DRB1-3:1

Basic information

LNCipedia transcript ID: lnc-HLA-DRB1-3:1 
LNCipedia gene ID: lnc-HLA-DRB1-3
Location (hg38): chr6:32659886-32662450
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 309 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000443574.1; XXbac-BPG254F23.6-001; OTTHUMT00000276134.1; NONHSAT108922
Alternative gene names: ENSG00000241287.1; XXbac-BPG254F23.6; OTTHUMG00000140104.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -181.509 non-coding 
CPAT coding probability 24.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HLA-DRB1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HLA-DRB1-3:1
4.0 lnc-HLA-DRB1-3:1
4.1 lnc-HLA-DRB1-3:1
5.0 lnc-HLA-DRB1-3:1
5.1 lnc-DXO-20:1
5.2 lnc-HLA-DRB1-3:1