Transcript: lnc-HLX-3:2

Basic information

LNCipedia transcript ID: lnc-HLX-3:2 
LNCipedia gene ID: lnc-HLX-3
Location (hg38): chr1:221046454-221085183
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 13467 bp
Exons: 6
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000036123.1|ENCT00000017815.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 1.908 non-coding 
CPAT coding probability 9.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HLX-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-HLX-3:2
5.0 lnc-HLX-3:2
5.1 lnc-CAPN2-44:1
5.2 lnc-HLX-3:2