Transcript: lnc-HMBOX1-1:1

Basic information

LNCipedia transcript ID: lnc-HMBOX1-1:1 
LNCipedia gene ID: lnc-HMBOX1-1
Location (hg38): chr8:29057846-29064920
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 6644 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00015261; NONHSAT125791
Alternative gene names: XLOC_006753; linc-LEPROTL1-6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 29.2534 non-coding 
CPAT coding probability 12.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HMBOX1-1:1 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HMBOX1-1:1
3.1 lnc-HMBOX1-1:1
4.0 lnc-HMBOX1-1:1
4.1 lnc-HMBOX1-1:1
5.0 lnc-HMBOX1-1:1
5.1 lnc-WRN-47:3
5.2 lnc-HMBOX1-1:1