Transcript: lnc-HMBOX1-1:2

Basic information

LNCipedia transcript ID: lnc-HMBOX1-1:2 
LNCipedia gene ID: lnc-HMBOX1-1
Location (hg38): chr8:29058382-29064928
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 6335 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00015262; NONHSAT125793
Alternative gene names: XLOC_006753; linc-LEPROTL1-6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 29.2534 non-coding 
CPAT coding probability 1.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HMBOX1-1:2 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HMBOX1-1:2
3.1 lnc-HMBOX1-1:2
4.0 lnc-HMBOX1-1:2
4.1 lnc-HMBOX1-1:2
5.0 lnc-HMBOX1-1:2
5.1 lnc-WRN-47:4
5.2 lnc-HMBOX1-1:2