Transcript: lnc-HMBOX1-1:5

Basic information

LNCipedia transcript ID: lnc-HMBOX1-1:5 
LNCipedia gene ID: lnc-HMBOX1-1
Ensembl Gene ID: ENSG00000259366
Ensembl Transcript ID: ENST00000560865
Location (hg38): chr8:29055935-29056685
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 552 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000560865.1; CTD-2647L4.4-001; OTTHUMT00000417037.1; NONHSAT125783
Alternative gene names: ENSG00000259366.1; CTD-2647L4.4; OTTHUMG00000172135.1; AC108449.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -322.6948 non-coding 
CPAT coding probability 0.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HMBOX1-1:5 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EXTL3-5:1
4.0 lnc-HMBOX1-1:5
4.1 lnc-HMBOX1-1:5
5.0 lnc-HMBOX1-1:5
5.1 lnc-WRN-47:1
5.2 lnc-HMBOX1-1:5