Transcript: lnc-HMBOX1-2:1

Basic information

LNCipedia transcript ID: lnc-HMBOX1-2:1 
LNCipedia gene ID: lnc-HMBOX1-2
Ensembl Gene ID: ENSG00000259607
Ensembl Transcript ID: ENST00000560714
Location (hg38): chr8:29067279-29068454
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 585 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000560714.1; CTD-2647L4.5-001; OTTHUMT00000417038.1; NONHSAT125804
Alternative gene names: ENSG00000259607.1; CTD-2647L4.5; OTTHUMG00000172136.1; AC108449.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -128.4656 non-coding 
CPAT coding probability 0.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HMBOX1-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HMBOX1-2:1
4.0 lnc-HMBOX1-2:1
4.1 lnc-HMBOX1-2:1
5.0 lnc-HMBOX1-2:1
5.1 lnc-WRN-46:1
5.2 lnc-HMBOX1-2:1