Transcript: lnc-HMG20A-1:1

Basic information

LNCipedia transcript ID: lnc-HMG20A-1:1 
LNCipedia gene ID: lnc-HMG20A-1
Ensembl Gene ID: ENSG00000259362
Ensembl Transcript ID: ENST00000561283
Location (hg38): chr15:77525540-77534110
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3814 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000561283.2; RP11-307C19.1-001; OTTHUMT00000419437.2; NONHSAT047446
Alternative gene names: ENSG00000259362.2; RP11-307C19.1; OTTHUMG00000172610.2; AC046168.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.4829 non-coding 
CPAT coding probability 14.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HMG20A-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HMG20A-1:1
4.0 lnc-HMG20A-1:1
4.1 lnc-HMG20A-1:1
5.0 lnc-HMG20A-1:1
5.1 lnc-PSTPIP1-4:1
5.2 lnc-HMG20A-1:1