Transcript: lnc-HMG20A-1:2

Basic information

LNCipedia transcript ID: lnc-HMG20A-1:2 
LNCipedia gene ID: lnc-HMG20A-1
RefSeq ID: NR_135692
Location (hg38): chr15:77525595-77534110
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3759 bp
Exons: 2
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_135692.1
Alternative gene names: LOC101929457


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -21.4829 non-coding 
CPAT coding probability 8.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HMG20A-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-PSTPIP1-4:2
5.1 lnc-PSTPIP1-4:2
5.2 lnc-HMG20A-1:2