Transcript: lnc-HMGA1-2:1

Basic information

LNCipedia transcript ID: lnc-HMGA1-2:1 
LNCipedia gene ID: lnc-HMGA1-2
Location (hg38): chr6:34279705-34284489
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4785 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000429998; ENST00000429998.1; RP11-513I15.6-001; OTTHUMT00000040220.1; NONHSAT112125
Alternative gene names: ENSG00000225339; RP11-513I15.6; ENSG00000225339.1; OTTHUMG00000014542.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -53.102 non-coding 
CPAT coding probability 0.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HMGA1-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HMGA1-2:1
3.1 lnc-HMGA1-2:1
4.0 lnc-HMGA1-2:1
4.1 lnc-HMGA1-2:1
5.0 lnc-HMGA1-2:1
5.1 lnc-PI16-71:8
5.2 lnc-HMGA1-2:1