Transcript: lnc-HMGA1-2:11

Basic information

LNCipedia transcript ID: lnc-HMGA1-2:11 
LNCipedia gene ID: lnc-HMGA1-2
Location (hg38): chr6:34284490-34286768
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2279 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000419956.1; RP1-187N21.2-001; OTTHUMT00000040223.1
Alternative gene names: ENSG00000232157.1; RP1-187N21.2; OTTHUMG00000014544.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -30.0052 non-coding 
CPAT coding probability 8.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HMGA1-2:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HMGA1-3:1
4.0 lnc-HMGA1-2:11
4.1 lnc-HMGA1-2:11
5.0 lnc-HMGA1-2:11
5.1 lnc-PI16-71:11
5.2 lnc-HMGA1-2:11