Transcript: lnc-HMGB2-13:1

Basic information

LNCipedia transcript ID: lnc-HMGB2-13:1 
LNCipedia gene ID: lnc-HMGB2-13
RefSeq ID: NR_125894
Location (hg38): chr4:172634684-172726878
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2107 bp
Exons: 3
Sources: NONCODE v4; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT099210; NR_125894.1
Alternative gene names: LOC101928314


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -58.396 non-coding 
CPAT coding probability 1.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HMGB2-13:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HMGB2-13:1
4.0 lnc-HMGB2-13:1
4.1 lnc-HMGB2-13:1
5.0 lnc-HMGB2-13:1
5.1 lnc-HPGD-37:1
5.2 lnc-HMGB2-13:1