Transcript: lnc-HMGB2-15:10

Basic information

LNCipedia transcript ID: lnc-HMGB2-15:10 
LNCipedia gene ID: lnc-HMGB2-15
Ensembl Gene ID: ENSG00000272870
Ensembl Transcript ID: ENST00000609900
Location (hg38): chr4:173367895-173369815
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1921 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609900.1
Alternative gene names: ENSG00000272870.1; RP11-798M19.6; AC097534.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.853 non-coding 
CPAT coding probability 1.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HMGB2-15:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SCRG1-1:11
4.0 lnc-HMGB2-15:10
4.1 lnc-HMGB2-15:10
5.0 lnc-HMGB2-15:10
5.1 lnc-HPGD-26:15
5.2 lnc-HMGB2-15:10